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 文章标题 : 6.10下如何安装ARB?
帖子发表于 : 2007-05-23 16:15 
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因课题需要使用ARB,装了UBUNTU 6.10。

但在安装时总是报错。

在终端输入该软件的安装命令(sh arb_install.sh)并执行后,出现对话命令,问是否创建/usr/arb文件夹,直接回车确认,却被报错说

引用:

Creating backup copy of arb_tcp.dat ..
cp: 无法确认 ‘/usr/arb/lib/arb_tcp.dat’: No such file or directory

********************************* ERROR ***********************
arb_install.sh: directory exists and is not writable
***************************** END OF ERROR ********************
Please rerun script !!!


切换用户到root并运行安装命令后,报错如下:

引用:
Creating backup copy of arb_tcp.dat ..
cp: cannot stat `/usr/arb/lib/arb_tcp.dat': No such file or directory


*******************************************
The destination directory already exists
You can delete the old directory before installing ARB
or only update/change options of the old version.
Delete old directory (y/n)[n]?
n

>>> old data not deleted
chmod: cannot access `/bin/arb/zcat': No such file or directory

********************************* ERROR ***********************
arb_install.sh: Cannot chmod of /bin/arb/zcat
***************************** END OF ERROR ********************
Please rerun script !!!


现在实在是不知道怎么解决了。

该软件在国产“同创linux”系统下可以正常安装并使用。

以下是ARB的安装说明:

引用:

Welcome to the 'ARB' Sequence Database Tools



/*********** Hardware and System Requirements *************/



ARB is currently developed on SUN workstations and Linux PCs.

The most recent version is now available for this machines.



Release dates / history:



HP Series 7000 June 95

PC Linux Jan 96 ( 486dx; >16 Mega Byte RAM)

SGI Irix June 96

Digital OSF April97

SUNOS4.x Mai 92

SUNOS5.x June 94



Hardware Requirements:

Minimum Good

Real Memory 32 64-256

Free Disc Space 100 1000

Computer Speed 486dx66 586dx90

Sparc 1 Sparc 5/10/20



Note: Memory is more important than a fast processor, a 486dx

width 64 mByte of RAM may be much faster than an

Ultra Sparc with 32 mByte of RAM.





/*********** Files needed to install ARB *************/



File FTP server location // Comment



'arb_README.txt' pub/ARB/ // this file

'arb_install.sh' pub/ARB/$MACH // install script

'arb.tgz' pub/ARB/$MACH // ARB program

'zcat' pub/ARB/$MACH // decompress (gzip)

['arb_ale.tgz' pub/ARB/$MACH // optional Editor ]

['***.arb' pub/ARB/data/ // optional demo /

real rRNA data ]



Notes:

- $MACH should be replaced by your system type

( type uname -sr to find out your system type )

- enable binary mode for ftp transfer ( command 'bin' )

- do not uncompress and untar arb.tar.gz directly, use the

install script !!!



/*********** Install/Update ARB *************/



ARB consists of more than 750 files which are installed into a single

directory. Creating this directory, copying all data into it, and setting

the permissions correctly is done by the installation script

'arb_install'



Goto the directory, where the files



'arb_install.sh' //install script

'arb_README.txt' //this file

'arb.tgz' //all the libs and bin

'zcat' //decompress

[ 'arb_ale.tgz' //optional sequence editor ]



are located and type '/bin/sh arb_install.sh'



Answer all questions asked by the script.

Notes: -The script will ask about a pt_server directory. This is a

directory where arb will store big index files.

You should enter a different path as you do not want to

recreate those files after an ARB update.

- Normally pressing enter will be a good choice.

- You can rerun the script many times, it can be used to

change an existing installation.



Change your .cshrc/.profile files:

Set the enviroment variable ARBHOME

to the ARB installation directory

Append $ARBHOME/bin to your PATH



reread it, (logout+login )



goto a directory with a demo database 'eg demo.arb'

and start 'ARB' with



'arb'



请支着阿~~~~多谢多谢~~~~


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 文章标题 :
帖子发表于 : 2007-05-24 15:55 
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顶起~~~


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3 楼 
 文章标题 : Re: 6.10下如何安装ARB?
帖子发表于 : 2009-11-27 12:43 

注册: 2009-11-27 12:41
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阿托品,
你好,我现在正在学习ARB的使用,可是都打不开ARB_NT的窗口,还有一些别的问题想想您请教,可以吗?


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