6.10下如何安装ARB？
发表于 ： 2007-05-23 16:15
因课题需要使用ARB，装了UBUNTU 6.10。
但在安装时总是报错。
在终端输入该软件的安装命令（sh arb_install.sh）并执行后，出现对话命令，问是否创建/usr/arb文件夹，直接回车确认，却被报错说
该软件在国产“同创linux”系统下可以正常安装并使用。
以下是ARB的安装说明：
但在安装时总是报错。
在终端输入该软件的安装命令（sh arb_install.sh）并执行后，出现对话命令，问是否创建/usr/arb文件夹，直接回车确认，却被报错说
切换用户到root并运行安装命令后，报错如下：
Creating backup copy of arb_tcp.dat ..
cp: 无法确认 ‘/usr/arb/lib/arb_tcp.dat’: No such file or directory
********************************* ERROR ***********************
arb_install.sh: directory exists and is not writable
***************************** END OF ERROR ********************
Please rerun script !!!
现在实在是不知道怎么解决了。Creating backup copy of arb_tcp.dat ..
cp: cannot stat `/usr/arb/lib/arb_tcp.dat': No such file or directory
*******************************************
The destination directory already exists
You can delete the old directory before installing ARB
or only update/change options of the old version.
Delete old directory (y/n)[n]?
n
>>> old data not deleted
chmod: cannot access `/bin/arb/zcat': No such file or directory
********************************* ERROR ***********************
arb_install.sh: Cannot chmod of /bin/arb/zcat
***************************** END OF ERROR ********************
Please rerun script !!!
该软件在国产“同创linux”系统下可以正常安装并使用。
以下是ARB的安装说明：
请支着阿～～～～多谢多谢～～～～
Welcome to the 'ARB' Sequence Database Tools
/*********** Hardware and System Requirements *************/
ARB is currently developed on SUN workstations and Linux PCs.
The most recent version is now available for this machines.
Release dates / history:
HP Series 7000 June 95
PC Linux Jan 96 ( 486dx; >16 Mega Byte RAM)
SGI Irix June 96
Digital OSF April97
SUNOS4.x Mai 92
SUNOS5.x June 94
Hardware Requirements:
Minimum Good
Real Memory 32 64-256
Free Disc Space 100 1000
Computer Speed 486dx66 586dx90
Sparc 1 Sparc 5/10/20
Note: Memory is more important than a fast processor, a 486dx
width 64 mByte of RAM may be much faster than an
Ultra Sparc with 32 mByte of RAM.
/*********** Files needed to install ARB *************/
File FTP server location // Comment
'arb_README.txt' pub/ARB/ // this file
'arb_install.sh' pub/ARB/$MACH // install script
'arb.tgz' pub/ARB/$MACH // ARB program
'zcat' pub/ARB/$MACH // decompress (gzip)
['arb_ale.tgz' pub/ARB/$MACH // optional Editor ]
['***.arb' pub/ARB/data/ // optional demo /
real rRNA data ]
Notes:
- $MACH should be replaced by your system type
( type uname -sr to find out your system type )
- enable binary mode for ftp transfer ( command 'bin' )
- do not uncompress and untar arb.tar.gz directly, use the
install script !!!
/*********** Install/Update ARB *************/
ARB consists of more than 750 files which are installed into a single
directory. Creating this directory, copying all data into it, and setting
the permissions correctly is done by the installation script
'arb_install'
Goto the directory, where the files
'arb_install.sh' //install script
'arb_README.txt' //this file
'arb.tgz' //all the libs and bin
'zcat' //decompress
[ 'arb_ale.tgz' //optional sequence editor ]
are located and type '/bin/sh arb_install.sh'
Answer all questions asked by the script.
Notes: -The script will ask about a pt_server directory. This is a
directory where arb will store big index files.
You should enter a different path as you do not want to
recreate those files after an ARB update.
- Normally pressing enter will be a good choice.
- You can rerun the script many times, it can be used to
change an existing installation.
Change your .cshrc/.profile files:
Set the enviroment variable ARBHOME
to the ARB installation directory
Append $ARBHOME/bin to your PATH
reread it, (logout+login )
goto a directory with a demo database 'eg demo.arb'
and start 'ARB' with
'arb'