Re: 编译语言的安装
发表于 : 2009-07-30 10:46
由 syfnet
把整个make的过程贴出来,麻烦帮忙看看。
ubuntu:~/mydoc/dock6_m/install# make install
Starting installation of
DOCK v6.3
at 2009年 07月 30日 星期四 11:09:12 CST.
cd ../src && make install
make[1]: 正在进入目录 `/root/mydoc/dock6_m/src'
cd dock && make install
make[2]: 正在进入目录 `/root/mydoc/dock6_m/src/dock'
g++ -c -O2 -o amber_typer.o amber_typer.cpp
g++ -c -O2 -o base_grid.o base_grid.cpp
base_grid.cpp: In member function ‘void Base_Grid::read_header(std::string)’:
base_grid.cpp:38: 警告: 忽略声明有 warn_unused_result 属性的‘size_t fread(void*, size_t, size_t, FILE*)’的返回值
base_grid.cpp:39: 警告: 忽略声明有 warn_unused_result 属性的‘size_t fread(void*, size_t, size_t, FILE*)’的返回值
base_grid.cpp:40: 警告: 忽略声明有 warn_unused_result 属性的‘size_t fread(void*, size_t, size_t, FILE*)’的返回值
base_grid.cpp:41: 警告: 忽略声明有 warn_unused_result 属性的‘size_t fread(void*, size_t, size_t, FILE*)’的返回值
g++ -c -O2 -o base_mpi.o base_mpi.cpp
g++ -c -O2 -o base_score.o base_score.cpp
g++ -c -O2 -o conf_gen.o conf_gen.cpp
g++ -c -O2 -o dock.o dock.cpp
dock.cpp: In function ‘int main(int, char**)’:
dock.cpp:86: 警告: 忽略声明有 warn_unused_result 属性的‘FILE* freopen(const char*, const char*, FILE*)’的返回值
g++ -c -O2 -o dockmol.o dockmol.cpp
g++ -c -O2 -o grid.o grid.cpp
grid.cpp: In member function ‘void Bump_Grid::read_bump_grid(std::string)’:
grid.cpp:58: 警告: 忽略声明有 warn_unused_result 属性的‘size_t fread(void*, size_t, size_t, FILE*)’的返回值
grid.cpp:59: 警告: 忽略声明有 warn_unused_result 属性的‘size_t fread(void*, size_t, size_t, FILE*)’的返回值
grid.cpp:60: 警告: 忽略声明有 warn_unused_result 属性的‘size_t fread(void*, size_t, size_t, FILE*)’的返回值
grid.cpp:61: 警告: 忽略声明有 warn_unused_result 属性的‘size_t fread(void*, size_t, size_t, FILE*)’的返回值
grid.cpp:64: 警告: 忽略声明有 warn_unused_result 属性的‘size_t fread(void*, size_t, size_t, FILE*)’的返回值
grid.cpp: In member function ‘void Contact_Grid::read_contact_grid(std::string)’:
grid.cpp:118: 警告: 忽略声明有 warn_unused_result 属性的‘size_t fread(void*, size_t, size_t, FILE*)’的返回值
grid.cpp:120: 警告: 忽略声明有 warn_unused_result 属性的‘size_t fread(void*, size_t, size_t, FILE*)’的返回值
grid.cpp: In member function ‘void Energy_Grid::read_energy_grid(std::string)’:
grid.cpp:174: 警告: 忽略声明有 warn_unused_result 属性的‘size_t fread(void*, size_t, size_t, FILE*)’的返回值
grid.cpp:175: 警告: 忽略声明有 warn_unused_result 属性的‘size_t fread(void*, size_t, size_t, FILE*)’的返回值
grid.cpp:176: 警告: 忽略声明有 warn_unused_result 属性的‘size_t fread(void*, size_t, size_t, FILE*)’的返回值
grid.cpp:177: 警告: 忽略声明有 warn_unused_result 属性的‘size_t fread(void*, size_t, size_t, FILE*)’的返回值
grid.cpp:183: 警告: 忽略声明有 warn_unused_result 属性的‘size_t fread(void*, size_t, size_t, FILE*)’的返回值
grid.cpp:184: 警告: 忽略声明有 warn_unused_result 属性的‘size_t fread(void*, size_t, size_t, FILE*)’的返回值
grid.cpp:185: 警告: 忽略声明有 warn_unused_result 属性的‘size_t fread(void*, size_t, size_t, FILE*)’的返回值
grid.cpp: In member function ‘void GB_Grid::read_gb_grid(std::string)’:
grid.cpp:241: 警告: 忽略声明有 warn_unused_result 属性的‘char* fgets(char*, int, FILE*)’的返回值
grid.cpp:242: 警告: 忽略声明有 warn_unused_result 属性的‘char* fgets(char*, int, FILE*)’的返回值
grid.cpp:246: 警告: 忽略声明有 warn_unused_result 属性的‘char* fgets(char*, int, FILE*)’的返回值
grid.cpp:285: 警告: 忽略声明有 warn_unused_result 属性的‘int fscanf(FILE*, const char*, ...)’的返回值
grid.cpp: In member function ‘void SA_Grid::read_sa_grid(std::string)’:
grid.cpp:339: 警告: 忽略声明有 warn_unused_result 属性的‘char* fgets(char*, int, FILE*)’的返回值
grid.cpp:342: 警告: 忽略声明有 warn_unused_result 属性的‘char* fgets(char*, int, FILE*)’的返回值
grid.cpp:346: 警告: 忽略声明有 warn_unused_result 属性的‘char* fgets(char*, int, FILE*)’的返回值
grid.cpp:383: 警告: 忽略声明有 warn_unused_result 属性的‘int fscanf(FILE*, const char*, ...)’的返回值
grid.cpp:387: 警告: 忽略声明有 warn_unused_result 属性的‘int fscanf(FILE*, const char*, ...)’的返回值
grid.cpp:413: 警告: 忽略声明有 warn_unused_result 属性的‘char* fgets(char*, int, FILE*)’的返回值
grid.cpp:416: 警告: 忽略声明有 warn_unused_result 属性的‘char* fgets(char*, int, FILE*)’的返回值
grid.cpp:424: 警告: 忽略声明有 warn_unused_result 属性的‘int fscanf(FILE*, const char*, ...)’的返回值
grid.cpp:430: 警告: 忽略声明有 warn_unused_result 属性的‘int fscanf(FILE*, const char*, ...)’的返回值
g++ -c -O2 -o library_file.o library_file.cpp
g++ -c -O2 -o master_score.o master_score.cpp
g++ -c -O2 -o orient.o orient.cpp
orient.cpp: In member function ‘void Orient::read_chem_match_tbl()’:
orient.cpp:1532: 警告: 忽略声明有 warn_unused_result 属性的‘int fscanf(FILE*, const char*, ...)’的返回值
g++ -c -O2 -o score.o score.cpp
g++ -c -O2 -o simplex.o simplex.cpp
g++ -c -O2 -o sphere.o sphere.cpp
g++ -c -O2 -o score_solvent.o score_solvent.cpp
score_solvent.cpp: In member function ‘float GB_Pairwise::get_gb_solvation_score(DOCKMol&)’:
score_solvent.cpp:281: 警告: 忽略声明有 warn_unused_result 属性的‘int fscanf(FILE*, const char*, ...)’的返回值
g++ -c -O2 -o score_amber.o score_amber.cpp
g++ -c -O2 -o sasa.o sasa.cpp
g++ -c -O2 -o score_chemgrid.o score_chemgrid.cpp
score_chemgrid.cpp: In member function ‘void Shape_Filter::read_shape_grid()’:
score_chemgrid.cpp:162: 警告: 忽略声明有 warn_unused_result 属性的‘char* fgets(char*, int, FILE*)’的返回值
score_chemgrid.cpp: In member function ‘void Chemgrid_Grid::read_chm_grid()’:
score_chemgrid.cpp:518: 警告: 忽略声明有 warn_unused_result 属性的‘size_t fread(void*, size_t, size_t, FILE*)’的返回值
score_chemgrid.cpp:519: 警告: 忽略声明有 warn_unused_result 属性的‘size_t fread(void*, size_t, size_t, FILE*)’的返回值
score_chemgrid.cpp:520: 警告: 忽略声明有 warn_unused_result 属性的‘size_t fread(void*, size_t, size_t, FILE*)’的返回值
score_chemgrid.cpp:521: 警告: 忽略声明有 warn_unused_result 属性的‘size_t fread(void*, size_t, size_t, FILE*)’的返回值
score_chemgrid.cpp:523: 警告: 忽略声明有 warn_unused_result 属性的‘size_t fread(void*, size_t, size_t, FILE*)’的返回值
score_chemgrid.cpp:524: 警告: 忽略声明有 warn_unused_result 属性的‘size_t fread(void*, size_t, size_t, FILE*)’的返回值
score_chemgrid.cpp:525: 警告: 忽略声明有 warn_unused_result 属性的‘size_t fread(void*, size_t, size_t, FILE*)’的返回值
score_chemgrid.cpp:531: 警告: 忽略声明有 warn_unused_result 属性的‘size_t fread(void*, size_t, size_t, FILE*)’的返回值
score_chemgrid.cpp:532: 警告: 忽略声明有 warn_unused_result 属性的‘size_t fread(void*, size_t, size_t, FILE*)’的返回值
score_chemgrid.cpp:533: 警告: 忽略声明有 warn_unused_result 属性的‘size_t fread(void*, size_t, size_t, FILE*)’的返回值
score_chemgrid.cpp: In member function ‘void Chemgrid_Grid::read_odm_grid()’:
score_chemgrid.cpp:560: 警告: 忽略声明有 warn_unused_result 属性的‘size_t fread(void*, size_t, size_t, FILE*)’的返回值
score_chemgrid.cpp:561: 警告: 忽略声明有 warn_unused_result 属性的‘size_t fread(void*, size_t, size_t, FILE*)’的返回值
score_chemgrid.cpp:562: 警告: 忽略声明有 warn_unused_result 属性的‘size_t fread(void*, size_t, size_t, FILE*)’的返回值
score_chemgrid.cpp:563: 警告: 忽略声明有 warn_unused_result 属性的‘size_t fread(void*, size_t, size_t, FILE*)’的返回值
score_chemgrid.cpp:570: 警告: 忽略声明有 warn_unused_result 属性的‘size_t fread(void*, size_t, size_t, FILE*)’的返回值
score_chemgrid.cpp:571: 警告: 忽略声明有 warn_unused_result 属性的‘size_t fread(void*, size_t, size_t, FILE*)’的返回值
score_chemgrid.cpp: In member function ‘void Chemgrid_Grid::read_phi_grid()’:
score_chemgrid.cpp:602: 警告: 忽略声明有 warn_unused_result 属性的‘size_t fread(void*, size_t, size_t, FILE*)’的返回值
score_chemgrid.cpp:603: 警告: 忽略声明有 warn_unused_result 属性的‘size_t fread(void*, size_t, size_t, FILE*)’的返回值
score_chemgrid.cpp:604: 警告: 忽略声明有 warn_unused_result 属性的‘size_t fread(void*, size_t, size_t, FILE*)’的返回值
score_chemgrid.cpp:605: 警告: 忽略声明有 warn_unused_result 属性的‘size_t fread(void*, size_t, size_t, FILE*)’的返回值
score_chemgrid.cpp:609: 警告: 忽略声明有 warn_unused_result 属性的‘size_t fread(void*, size_t, size_t, FILE*)’的返回值
score_chemgrid.cpp: In member function ‘void Chemgrid_Grid::read_solv_grid()’:
score_chemgrid.cpp:680: 警告: 忽略声明有 warn_unused_result 属性的‘char* fgets(char*, int, FILE*)’的返回值
score_chemgrid.cpp:690: 警告: 忽略声明有 warn_unused_result 属性的‘char* fgets(char*, int, FILE*)’的返回值
score_chemgrid.cpp: In member function ‘void Chemgrid_Grid::read_rdsol_grid()’:
score_chemgrid.cpp:766: 警告: 忽略声明有 warn_unused_result 属性的‘char* fgets(char*, int, FILE*)’的返回值
g++ -c -O2 -o utils.o utils.cpp
g++ -c -O2 -o trace.o trace.cpp
cd nab && make all
make[3]: 正在进入目录 `/root/mydoc/dock6_m/src/dock/nab'
gcc -c -O3 -D_ANSI_SOURCE -DDOCK -Dflex sff.c
gcc -c -O2 -o traceback.o traceback.c
traceback.c: 在函数‘rt_errormsg’中:
traceback.c:14: 警告: 格式字符串不是一个字面字符串而且没有待格式化的实参
gcc -c -O2 -o select_atoms.o select_atoms.c
gcc -c -O2 -o memutil.o memutil.c
memutil.c: 在函数‘vector’中:
memutil.c:31: 警告: 格式‘%lld’需要类型‘long long int’,但实参 3 的类型为‘size_t’
gcc -c -O2 -o reslib.o reslib.c
gcc -c -O2 -o jacobi.o jacobi.c
gcc -c -O2 -o molutil.o molutil.c
molutil.c: 在函数‘get’中:
molutil.c:111: 警告: 格式‘%ld’需要类型‘long int’,但实参 3 的类型为‘size_t’
gcc -c -O2 -o chirvol.o chirvol.c
gcc -c -O2 -o regexp.o regexp.c
gcc -c -O2 -o binpos.o binpos.c
gcc -c -O2 -o time.o time.c
gcc -c -O3 -D_ANSI_SOURCE rand2.c
gcc -c -O3 -D_ANSI_SOURCE conjgrad.c
gcc -c -O2 -o database.o database.c
database.c: 在函数‘zbDBReadLine’中:
database.c:686: 警告: 忽略声明有 warn_unused_result 属性的‘fgets’的返回值
gcc -c -O2 -o tleap.o tleap.c
tleap.c: 在函数‘tleap’中:
tleap.c:41: 警告: 忽略声明有 warn_unused_result 属性的‘system’的返回值
ar rv nab.a molio.o prm.o sff.o traceback.o select_atoms.o memutil.o reslib.o jacobi.o molutil.o chirvol.o regexp.o binpos.o time.o rand2.o conjgrad.o database.o tleap.o
ar: creating nab.a
a - molio.o
a - prm.o
a - sff.o
a - traceback.o
a - select_atoms.o
a - memutil.o
a - reslib.o
a - jacobi.o
a - molutil.o
a - chirvol.o
a - regexp.o
a - binpos.o
a - time.o
a - rand2.o
a - conjgrad.o
a - database.o
a - tleap.o
ranlib nab.a
make[3]:正在离开目录 `/root/mydoc/dock6_m/src/dock/nab'
g++ -O2 -o dock6 amber_typer.o base_grid.o base_mpi.o base_score.o conf_gen.o dock.o dockmol.o grid.o library_file.o master_score.o orient.o score.o simplex.o sphere.o score_solvent.o score_amber.o sasa.o score_chemgrid.o utils.o trace.o nab/*.o -lm -lpthread
mv dock6 ../../bin
make[2]:正在离开目录 `/root/mydoc/dock6_m/src/dock'
cd accessories && make install
make[2]: 正在进入目录 `/root/mydoc/dock6_m/src/accessories'
g77 -c -O2 -fno-automatic -fno-second-underscore -o showbox.o showbox.f
make[2]: g77:命令未找到
make[2]: *** [showbox.o] 错误 127
make[2]:正在离开目录 `/root/mydoc/dock6_m/src/accessories'
make[1]: *** [utils] 错误 2
make[1]:正在离开目录 `/root/mydoc/dock6_m/src'
make: *** [install] 错误 2
这是./configure 生成的文件:
# DOCK configuration file for GNU compilers.
# This configuration file can be used on many platforms:
# Linux, Macintosh OS X, Windows with Cygwin, etc.
# If g77 is not available then change FC below to gfortran or g95.
# CC is the C compiler
# CXX is the C++ compiler
# CFLAGS is the flags for the C and C++ compilers
# FC is the Fortran compiler
# FFLAGS is the flags for the Fortran compiler
# LIBS is the flags for the linker
# LINK_WITHOUT_FORTRAN_MAIN is the flag for linking without Fortran's main
# LOAD is the command to invoke the linker
# DOCK_SUFFIX is the suffix for the dock executable
CC= gcc
CXX= g++
CFLAGS= -O2
FC= g77
FFLAGS= -O2 -fno-automatic -fno-second-underscore
LIBS= -lm -lpthread
LINK_WITHOUT_FORTRAN_MAIN=
LOAD= g++
DOCK_SUFFIX=
# Macro definitions for NAB
# AR is the library archiver
# LEX is the lexical analyzer generator
# OCFLAGS is the flags for the C compilers with high optimization
# RANLIB is the library index generator
AR= ar rv
LEX= flex
OCFLAGS= -O3 -D_ANSI_SOURCE
RANLIB= ranlib
DOCKHOME=/root/mydoc/dock6_m
# Created at 2009年 07月 30日 星期四 10:47:11 CST via ./configure gnu
我把config文件中的g77改成了gfortran,重新make则显示:命令yacc未找到。